No, it shouldnt have been. LSU had already beaten Alabama to show that they were the better team in the SEC West. Georgia and Alabama both lost one conference game, Georgia won the games it needed to in order to go to Atlanta, Bama did not.So Oregon should have a better chance at the National Championship than Stanford even though Oregon lost twice and Stanford only lost once? Doesn't seem right to me.
Edit: I forgot to say that it's divisions within conferences that mess this up. The SEC Championship game should have been LSU-Bama, but it wasn't allowed to be. Stupid IMO.